ParasailResult

Stores alignment results (scores, cigar, alignment starts). Contains pointers to underlying parasail data. Owns parasail_result_t.

struct ParasailResult {

this(Parasail* alnSettings, parasail_result_t* result, string s1, string s2);

int position();

int queryPosition();

int endQuery();

int endRef();

float identity();

float similarity();

float gapRate();

Cigar cigar();

void writeAlignment();

}

Constructors

this this(): need to use a constructor
this this(Parasail* alnSettings, parasail_result_t* result, string s1, string s2): ctor for strings

Members

Functions

cigar Cigar cigar(): get cigar string of alignment
endQuery int endQuery(): starting position of the alignment on the reference/target sequence
endRef int endRef(): starting position of the alignment on the query sequence
gapRate float gapRate(): get identity
identity float identity(): get identity
position int position(): starting position of the alignment on the reference/target sequence
queryPosition int queryPosition(): starting position of the alignment on the query sequence
score int score(): alignment score
similarity float similarity(): get similarity
writeAlignment void writeAlignment(): display parasail representation of alignment

Meta

Source

See Implementation

dparasail result structs

ParasailResult