Parasail

Undocumented in source.

struct Parasail {

}

Constructors

this this(): Undocumented in source.
this this(string matrix, int open, int ext, int match, int mismatch): use a prebuilt parasail scoring matrix or an alphabet matrix and a gap and ext penalty
this this(string matrix, string databaseSequence, int open, int ext, int match, int mismatch): use a prebuilt parasail scoring matrix or an alphabet matrix with a database sequence and a gap and ext penalty
this this(parasail_matrix_t* matrix, string databaseSequence, int open, int ext): use a parasail_matrix_t directly with a database sequence and a gap and ext penalty
this this(parasail_matrix_t* matrix, int open, int ext): use a parasail_matrix_t directly and a gap and ext penalty

aligner ParasailResult aligner(string s1, string s2): Undocumented in source. Be warned that the author may not have intended to support it.
databaseAligner ParasailResult databaseAligner(string s2): Undocumented in source. Be warned that the author may not have intended to support it.
nw_scan ParasailResult nw_scan(string s1, string s2): Undocumented in source. Be warned that the author may not have intended to support it.
scoreMatrix auto scoreMatrix(): get scoring matrix
sw_striped ParasailResult sw_striped(string s1, string s2): run sw alignment