Parasail

Undocumented in source.

struct Parasail {

parasail_matrix_t* score_matrix;

this(string matrix, int open, int gap);

this(string alphabet, int match, int mismatch, int open, int gap);

parasail_query sw_striped(string s1, string s2);

parasail_query sw_striped(char* s1, char* s2, int s1Len, int s2Len);

parasail_result_t* sw_striped(parasail_query p);

parasail_query nw_scan(string s1, string s2);

parasail_query nw_scan(char* s1, char* s2, int s1Len, int s2Len);

parasail_result_t* nw_scan(parasail_query p);

parasail_query aligner(string s1, string s2);

parasail_query aligner(char* s1, char* s2, int s1Len, int s2Len);

parasail_result_t* aligner(parasail_query p);

void close();

}

Constructors

this this(): Undocumented in source.
this this(string matrix, int open, int gap): Undocumented in source.
this this(string alphabet, int match, int mismatch, int open, int gap): Undocumented in source.

Members

Functions

aligner parasail_query aligner(char* s1, char* s2, int s1Len, int s2Len): Undocumented in source. Be warned that the author may not have intended to support it.
aligner parasail_result_t* aligner(parasail_query p): Undocumented in source. Be warned that the author may not have intended to support it.
aligner parasail_query aligner(string s1, string s2): Undocumented in source. Be warned that the author may not have intended to support it.
close void close(): Undocumented in source. Be warned that the author may not have intended to support it.
nw_scan parasail_query nw_scan(string s1, string s2): Undocumented in source. Be warned that the author may not have intended to support it.
nw_scan parasail_query nw_scan(char* s1, char* s2, int s1Len, int s2Len): Undocumented in source. Be warned that the author may not have intended to support it.
nw_scan parasail_result_t* nw_scan(parasail_query p): Undocumented in source. Be warned that the author may not have intended to support it.
sw_striped parasail_query sw_striped(string s1, string s2): Undocumented in source. Be warned that the author may not have intended to support it.
sw_striped parasail_query sw_striped(char* s1, char* s2, int s1Len, int s2Len): Undocumented in source. Be warned that the author may not have intended to support it.
sw_striped parasail_result_t* sw_striped(parasail_query p): Undocumented in source. Be warned that the author may not have intended to support it.

Variables

gap int gap;: Undocumented in source.
open int open;: Undocumented in source.
score_matrix parasail_matrix_t* score_matrix;: Undocumented in source.

Meta

Source

See Implementation

dparasail structs